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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015813839.1_cds_XP_016497713.1_11813
CDS Infomation

[gene=LOC107816504] [db_xref=GeneID:107816504] [protein=probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2] [protein_id=XP_016497713.1] [location=complement(join(46800..46842,46960..47122,50246..50492,52774..52903,59502..59579,60070..60215,64348..64608,64838..65086,65400..65537,66405..66503,67721..67912,69270..69773))] [gbkey=CDS]
Sequence

ATGGGAACTTCTGAAATAGATGAGATGCCGATGTTATCATCATCATATCCGCAGTCTAAT
GAAATTGATGGCTTTCAAGATCAACGTTTTACGTACAGGACAAGGAGTGCATCCTTATCA
ATGCCAATGAGCTCTATGGATTCCTTTGGAAATGATAGTAGTTTTGTAGGCTATACCGGT
CCTTTGAGAAGTGAGGGACGAACTTCATTGGTTCATATGAGCGGGCCATTATATATTAGT
CACAAGCCTGAGAATAGCTCTCGGCCCACTCCCACTGCAGTAGTGCACAAACCAACTCTG
CCAACAACAGAAAAATATCCTTCAATTGGCAGTGGAGAACAAAATGGTTGGACTAATAAT
GACTACACTGGAAAAAATGAACATCTATTGAAGTCCGGTCAACTGGGCATGTGCAGTGAT
CCTTACTGCACAACATGCCCAACTGATAACCATTTGAAAGCACAAAAAAAAAGTTCGAAG
TCTGCAGATATGTTTGATCACCAGTTCCATAATATGCTGTATGGAGATACAAAAGGATGG
GCGAAGAGAACTTGTTCTTTCTTGTATCCATATATTCCTGGTGTCATGAATCCTCATGCG
AAGATTGTCCAGAAGTGGAACAAATTTTTTGTCATCTCATGCCTATTTGCATTATTTATA
GATCCCCTGTTCTTCTTTTTGCTTAATGTCCAACAGGGGAACAAATGCATAGTGCTAAAT
TGGCAAATGACAAAAATTATTGTGATTTTGAGGAGCATCACTGATATCATTTACTTAATG
CACATTCTTCTTCAGTTCCGCTTAGCTTATGTTGTTCCTGAATCTAGGGTGGTGGGAGCA
GGTGACCTGGTTGACCACCCTAAAATGATTGCTATAAATTATCTTTCTGGATACTTTGTT
GTTGACTTTTTTGTCGTACTACCACTTCCTCAGATCATCATTTTGTTGGTTTTACCCAAG
TCTATTGGATCATCTGGGGTAAATTACACGAAGAATCTACTGTGGGCAGCTATACTACTC
CAGTACAATTCTAGGTTGTACAGGATTTATTATTTGGTTGCTGGCCAGTCTCCAAGTGGT
TTTATATTTGAGTCAATATGGGCAACTTTTGTCATAAATCTTCTCATAATTGTTGTATCA
AGCAATATAGTGGGCTCATTGTGGTATCTTTTTGGTTTACAGAGGGTTAATCTATGCCTT
CAAGGTGCTTGTCGTAGCTCAAACATAGAAAGGTGTATGGAGTTCATAGACTGTGGTCAT
GGCACCGATTACACAAAGTTTCGGTCAGATATTACATGGGACCAGTGGAAGAACAATACT
GATGCAGTTGCTTGTTTTACTGAAGGTAGTTTTGACTTTGGGATCTATAAACAAGCTGTT
GATCTCACCACCAAACAGAATGTTGTCACAAGATATGTGTACTCATTCTTTTGGGGCTTC
CAGCAAATTAGTACACTGGCTGGCAATCAAGTCCCGAGTTATTTTCTGTTGGAAGTTGTT
TTCACAATTGCTATCATCGGAACGGGACTCCTACTTTTTGCACTCCTGATTGGAAATATG
CAGAGCTTTCAGCAGTCTCTAAATCGCAGGAGGTTAGAAATGTCTCTCAGGCGTCGTGAT
GTTGGACAATGGATGAGCCATAGGCGCTTTCCAGAAGAACTAAGAAGGCGAGTTCTAGAG
GCTGAGAGATATAATTGGGCAGCTACCAGAGGGGTCAACGAAGAAATGCTACTAGAGAAT
CTTCCCGAAGATGTTCAAAGAGATATTAGGAGACATCTTTTTAGATTCATCAAAAAGGTC
CAGATATTTGCACTTCTCGATGAACCCATCTTAGATGCTATCTGTGAGAGATTGAGACTG
AAAACATACATAGCAGGAAGCAAAGTTTTATACCGTGGTGGTCTGGTTGACAAGATGGTT
TTCATAATTCGGGGTAAGATGGAAAGCATTGGAGAAGATGGAAATGTGGCCTCCTTGTCT
GAAGGGGATGCCTGTGGGGAAGAACTCCTCACATGGTGCCTTGAGCATTCTTCTATAAAC
AGAGATGGAAAAAAGATCAGAATTCCAGGACACAGATTGCTGAGCAACAGACTAGTTAGG
TGCCTAACAAATGTTGAAGCCTTTATATTACGAGCTGCAGATCTTAAAGAAGTCACCAAT
CTTTTCGCAAGATTCTCGAGGAGTCCACCTGTTCAAGGTGCCATAAGTGTCAGATTTGTA
AAGCAGACAAGATATGAGAAGATCAACTAG

Peptide Sequence

PEP ID

XP_016497713.1
PEP Infomation

PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Nicotiana tabacum]
Sequence

MGTSEIDEMPMLSSSYPQSNEIDGFQDQRFTYRTRSASLSMPMSSMDSFGNDSSFVGYTG
PLRSEGRTSLVHMSGPLYISHKPENSSRPTPTAVVHKPTLPTTEKYPSIGSGEQNGWTNN
DYTGKNEHLLKSGQLGMCSDPYCTTCPTDNHLKAQKKSSKSADMFDHQFHNMLYGDTKGW
AKRTCSFLYPYIPGVMNPHAKIVQKWNKFFVISCLFALFIDPLFFFLLNVQQGNKCIVLN
WQMTKIIVILRSITDIIYLMHILLQFRLAYVVPESRVVGAGDLVDHPKMIAINYLSGYFV
VDFFVVLPLPQIIILLVLPKSIGSSGVNYTKNLLWAAILLQYNSRLYRIYYLVAGQSPSG
FIFESIWATFVINLLIIVVSSNIVGSLWYLFGLQRVNLCLQGACRSSNIERCMEFIDCGH
GTDYTKFRSDITWDQWKNNTDAVACFTEGSFDFGIYKQAVDLTTKQNVVTRYVYSFFWGF
QQISTLAGNQVPSYFLLEVVFTIAIIGTGLLLFALLIGNMQSFQQSLNRRRLEMSLRRRD
VGQWMSHRRFPEELRRRVLEAERYNWAATRGVNEEMLLENLPEDVQRDIRRHLFRFIKKV
QIFALLDEPILDAICERLRLKTYIAGSKVLYRGGLVDKMVFIIRGKMESIGEDGNVASLS
EGDACGEELLTWCLEHSSINRDGKKIRIPGHRLLSNRLVRCLTNVEAFILRAADLKEVTN
LFARFSRSPPVQGAISVRFVKQTRYEKIN

Transcript Sequence

Gene sequence data has not been registered.